„Simulation-based Algorithms“

Suchergebnisse

1.000+ Treffer

• The integration of weighted human gene association networks based on link prediction
  Yang, Jian ; Yang, Tinghong ; Wu, Duzhi ; Lin, Limei ; Yang, Fan ; Zhao, Jing
• Identifying co-targets to fight drug resistance based on a random walk model
  Chen, Liang-Chun ; Yeh, Hsiang-Yuan ; Yeh, Cheng-Yu ; Arias, Carlos Roberto ; Soo, Von-Wun
• Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data
  Gu, Fei ; Hsu, Hang-Kai ; Hsu, Pei-Yin ; Wu, Jiejun ; Ma, Yilin ; Parvin, Jeffrey ; Huang, Tim H-M ; Jin, Victor X.
• Constraint-based modeling analysis of the metabolism of two Pelobacter species
  Sun, Jun ; Haveman, Shelley A. ; Bui, Olivia ; Fahland, Tom R. ; Lovley, Derek R.
• Protein complex prediction based on k-connected subgraphs in protein interaction network
  Habibi, Mahnaz ; Eslahchi, Changiz ; Wong, Limsoon
• Validation of a constraint-based model of Pichia pastoris metabolism under data scarcity
  Tortajada, Marta ; Llaneras, Francisco ; Picó, Jesús
• Model-based extension of high-throughput to high-content data
  Pfeifer, Andrea ; Kaschek, Daniel ; Bachmann, Julie ; Klingmüller, Ursula ; Timmer, Jens
• A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1
  Sigurdsson, Martin I. ; Jamshidi, Neema ; Steingrimsson, Eirikur ; Thiele, Ines ; Palsson, Bernhard Ø
• Systems approach to investigating host-pathogen interactions in infections with the biothreat agent Francisella. Constraints-based model of Francisella tularensis
  Raghunathan, Anu ; Shin, Sookil ; Daefler, Simon
• Prediction of quantitative phenotypes based on genetic networks: a case study in yeast sporulation
  Shen, Li ; Chepelev, Iouri ; Liu, Jie ; Wang, Wei
• A rule-based model of insulin signalling pathway
  Di Camillo, Barbara ; Carlon, Azzurra ; Eduati, Federica ; Toffolo, Gianna Maria
• Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach
  Meyer, Pablo ; Cokelaer, Thomas ; Chandran, Deepak ; Kim, Kyung Hyuk ; Loh, Po-Ru ; Tucker, George ; Lipson, Mark ; Berger, Bonnie ; Kreutz, Clemens ; Raue, Andreas ; Steiert, Bernhard ; Timmer, Jens ; Bilal, Erhan ; Sauro, Herbert M. ; Stolovitzky, Gustavo ; Sáez Rodríguez, Julio
• Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling
  Piro, Rosario M. ; Wiesberg, Stefan ; Schramm, Gunnar ; Rebel, Nico ; Oswald, Marcus ; Eils, Roland ; Reinelt, Gerhard ; König, Rainer
• Hierarchical Cluster-based Partial Least Squares Regression (HC-PLSR) is an efficient tool for metamodelling of nonlinear dynamic models
  Tøndel, Kristin ; Indahl, Ulf G. ; Gjuvsland, Arne B. ; Vik, Jon Olav ; Hunter, Peter ; Omholt, Stig W. ; Martens, Harald
• Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach
  Fukushima, Atsushi ; Kusano, Miyako ; Redestig, Henning ; Arita, Masanori ; Saito, Kazuki
• SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants
  Flórez, Lope A. ; Gunka, Katrin ; Polanía, Rafael ; Tholen, Stefan ; Stülke, Jörg
• Systems biology of bacterial nitrogen fixation: High-throughput technology and its integrative description with constraint-based modeling
  Resendis-Antonio, Osbaldo ; Hernández, Magdalena ; Salazar, Emmanuel ; Contreras, Sandra ; Batallar, Gabriel Martínez ; Mora, Yolanda ; Encarnación, Sergio
• Modularity-based credible prediction of disease genes and detection of disease subtypes on the phenotype-gene heterogeneous network
  Yao, Xin ; Hao, Han ; Li, Yanda ; Li, Shao
• Model-based clustering reveals vitamin D dependent multi-centrality hubs in a network of vitamin-related proteins
  Nguyen, Thanh-Phuong ; Scotti, Marco ; Morine, Melissa J. ; Priami, Corrado
• Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics
  Redestig, Henning ; Kusano, Miyako ; Ebana, Kaworu ; Kobayashi, Makoto ; Oikawa, Akira ; Okazaki, Yozo ; Matsuda, Fumio ; Arita, Masanori ; Fujita, Naoko ; Saito, Kazuki