„combinatorial algorithm“

Suchergebnisse

8.292 Treffer

• MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectories
  Abdel-Azeim, Safwat ; Chermak, Edrisse ; Vangone, Anna ; Oliva, Romina ; Cavallo, Luigi
• ConTemplate: exploiting the protein databank to propose ensemble of conformations of a query protein of known structure
  Narunsky, Aya ; Ben-Tal, Nir
• Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis
  Yilmazel, Bahar ; Hu, Yanhui ; Sigoillot, Frederic ; Smith, Jennifer A. ; Shamu, Caroline E. ; Perrimon, Norbert ; Mohr, Stephanie Elizabeth
• HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data
  Wirawan, Adrianto ; Harris, Robert S. ; Liu, Yongchao ; Schmidt, Bertil ; Schröder, Jan
• Mapping proteins in the presence of paralogs using units of coevolution
  El-Kebir, Mohammed ; Marschall, Tobias ; Wohlers, Inken ; Patterson, Murray ; Heringa, Jaap ; Schönhuth, Alexander ; Klau, Gunnar
• Propagating semantic information in biochemical network models
  Schulz, Marvin ; Klipp, Edda ; Liebermeister, Wolfram
• Network enrichment analysis: extension of gene-set enrichment analysis to gene networks
  Alexeyenko, Andrey ; Lee, Woojoo ; Pernemalm, Maria ; Guegan, Justin ; Dessen, Philippe ; Lazar, Vladimir ; Lehtiö, Janne ; Pawitan, Yudi
• PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools
  O'Callaghan, Sean ; De Souza, David P. ; Isaac, Andrew ; Wang, Qiao ; Hodkinson, Luke ; Olshansky, Moshe ; Erwin, Tim ; Appelbe, Bill ; Tull, Dedreia L. ; Roessner, Ute ; Bacic, Antony ; McConville, Malcolm J. ; Likić, Vladimir A.
• Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface
  Sroka, Jacek ; Bieniasz-Krzywiec, Łukasz ; Gwóźdź, Szymon ; Leniowski, Dariusz ; Łącki, Jakub ; Markowski, Mateusz ; Avignone-Rossa, Claudio ; Bushell, Michael E. ; McFadden, Johnjoe ; Kierzek, Andrzej M.
• A fast and robust hepatocyte quantification algorithm including vein processing
  Ivanovska, Tetyana ; Schenk, Andrea ; Homeyer, André ; Deng, Meihong ; Dahmen, Uta ; Dirsch, Olaf ; Hahn, Horst K. ; Linsen, Lars
• MetaBar - a tool for consistent contextual data acquisition and standards compliant submission
  Hankeln, Wolfgang ; Buttigieg, Pier Luigi ; Fink, Dennis ; Kottmann, Renzo ; Yilmaz, Pelin ; Glöckner, Frank Oliver
• Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP
  Hawkins, Troy ; Chitale, Meghana ; Kihara, Daisuke
• LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships
  Barbosa-Silva, Adriano ; Soldatos, Theodoros G. ; Magalhães, Ivan LF ; Pavlopoulos, Georgios A. ; Fontaine, Jean-Fred ; Andrade-Navarro, Miguel A. ; Schneider, Reinhard ; Ortega, J Miguel
• Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation
  Alfieri, Roberta ; Barberis, Matteo ; Chiaradonna, Ferdinando ; Gaglio, Daniela ; Milanesi, Luciano ; Vanoni, Marco ; Klipp, Edda ; Alberghina, Lilia
• JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes
  Liang, Chunguang ; Schmid, Alexander ; López-Sánchez, María José ; Moya, Andrés ; Gross, Roy ; Bernhardt, Jörg ; Dandekar, Thomas
• Gene set analyses for interpreting microarray experiments on prokaryotic organisms
  Tintle, Nathan L. ; Best, Aaron A. ; DeJongh, Matthew ; Van Bruggen, Dirk ; Heffron, Fred ; Porwollik, Steffen ; Taylor, Ronald C.
• FUNC: a package for detecting significant associations between gene sets and ontological annotations
  Prüfer, Kay ; Muetzel, Bjoern ; Do, Hong-Hai ; WEISS, GUNTER ; Khaitovich, Philipp ; Rahm, Erhard ; Pääbo, Svante ; Lachmann, Michael ; Enard, Wolfgang
• The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
  Verhaak, Roel GW ; Staal, Frank JT ; Valk, Peter JM ; Löwenberg, Bob ; Reinders, Marcel JT ; de Ridder, Dick
• UniFrac – An online tool for comparing microbial community diversity in a phylogenetic context
  Lozupone, Catherine ; Hamady, Micah ; Knight, Rob
• T.I.M.S: TaqMan Information Management System, tools to organize data flow in a genotyping laboratory
  Monnier, Stéphanie ; Cox, David G. ; Albion, Tim ; Canzian, Federico