„multiple alignments“

Suchergebnisse

85 Treffer

• MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments
  Collingridge, Peter W. ; Kelly, Steven
• Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment
  Daniels, Noah M. ; Nadimpalli, Shilpa ; Cowen, Lenore J.
• GenNon-h: Generating multiple sequence alignments on nonhomogeneous phylogenetic trees
  Kedzierska, Anna M. ; Casanellas, Marta
• Exploratory visual analysis of conserved domains on multiple sequence alignments
  Jankun-Kelly, TJ ; Lindeman, Andrew D. ; Bridges, Susan M.
• Algorithms for locating extremely conserved elements in multiple sequence alignments
  Tseng, Huei-Hun E. ; Tompa, Martin
• H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
  Merkl, Rainer ; Zwick, Matthias
• Designing multiple degenerate primers via consecutive pairwise alignments
  Najafabadi, Hamed Shateri ; Torabi, Noorossadat ; Chamankhah, Mahmood
• A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
  Chica, Claudia ; Labarga, Alberto ; Gould, Cathryn M. ; Lopez, Rodrigo ; Gibson, Toby J.
• ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
  Roca, Alberto I. ; Almada, Albert E. ; Abajian, Aaron C.
• Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments
  Zheng, Ce ; Kurgan, Lukasz
• Automatic extraction of reliable regions from multiple sequence alignments
  Lassmann, Timo ; Sonnhammer, Erik LL
• How accurately is ncRNA aligned within whole-genome multiple alignments?
  Wang, Adrienne X. ; Ruzzo, Walter L. ; Tompa, Martin
• PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
  Caffrey, Daniel R. ; Dana, Paul H. ; Mathur, Vidhya ; Ocano, Marco ; Hong, Eun-Jong ; Wang, Yaoyu E. ; Somaroo, Shyamal ; Caffrey, Brian E. ; Potluri, Shobha ; Huang, Enoch S.
• Multiple non-collinear TF-map alignments of promoter regions
  Blanco, Enrique ; Guigo, Roderic ; Messeguer, Xavier
• State of the art: refinement of multiple sequence alignments
  Chakrabarti, Saikat ; Lanczycki, Christopher J. ; Panchenko, Anna R. ; Przytycka, Teresa M. ; Thiessen, Paul A. ; Bryant, Stephen H.
• Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
  Pollard, Daniel A. ; Moses, Alan M. ; Iyer, Venky N. ; Eisen, Michael B.
• Genomic multiple sequence alignments: refinement using a genetic algorithm
  Wang, Chunlin ; Lefkowitz, Elliot J.
• Multiple sequence alignments of partially coding nucleic acid sequences
  Stocsits, Roman R. ; Hofacker, Ivo L. ; Fried, Claudia ; Stadler, Peter F.
• Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome
  Matveeva, Olga V. ; Foley, Brian T. ; Nemtsov, Vladimir A. ; Gesteland, Raymond F. ; Matsufuji, Senya ; Atkins, John F. ; Ogurtsov, Aleksey Y. ; Shabalina, Svetlana A.
• Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
  Sadreyev, Ruslan I. ; Grishin, Nick V.