„Alignment“

Suchergebnisse

8.216 Treffer

• Lower bounds on multiple sequence alignment using exact 3-way alignment
  Colbourn, Charles J. ; Kumar, Sudhir
• Logarithmic gap costs decrease alignment accuracy
  Cartwright, Reed A.
• CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes
  Uchiyama, Ikuo ; Higuchi, Toshio ; Kobayashi, Ichizo
• Subfamily logos: visualization of sequence deviations at alignment positions with high information content
  Beitz, Eric
• Quantification of the variation in percentage identity for protein sequence alignments
  Raghava, GPS ; Barton, Geoffrey J.
• Optimizing amino acid substitution matrices with a local alignment kernel
  Saigo, Hiroto ; Vert, Jean-Philippe ; Akutsu, Tatsuya
• Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost
  Yamada, Shinsuke ; Gotoh, Osamu ; Yamana, Hayato
• Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
  Siddharthan, Rahul
• Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints
  Dowell, Robin D. ; Eddy, Sean R.
• Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
  Ohlson, Tomas ; Aggarwal, Varun ; Elofsson, Arne ; MacCallum, Robert M.
• MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
  Wang, Jun ; Keightley, Peter D. ; Johnson, Toby
• Connectivity independent protein-structure alignment: a hierarchical approach
  Kolbeck, Bjoern ; May, Patrick ; Schmidt-Goenner, Tobias ; Steinke, Thomas ; Knapp, Ernst-Walter
• The accuracy of several multiple sequence alignment programs for proteins
  Nuin, Paulo AS ; Wang, Zhouzhi ; Tillier, Elisabeth RM
• State of the art: refinement of multiple sequence alignments
  Chakrabarti, Saikat ; Lanczycki, Christopher J. ; Panchenko, Anna R. ; Przytycka, Teresa M. ; Thiessen, Paul A. ; Bryant, Stephen H.
• Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
  Pollard, Daniel A. ; Moses, Alan M. ; Iyer, Venky N. ; Eisen, Michael B.
• Improving the quality of protein structure models by selecting from alignment alternatives
  Sommer, Ingolf ; Toppo, Stefano ; Sander, Oliver ; Lengauer, Thomas ; Tosatto, Silvio CE
• SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools
  Shih, Arthur Chun-Chieh ; Lee, DT ; Lin, Laurent ; Peng, Chin-Lin ; Chen, Shiang-Heng ; Wu, Yu-Wei ; Wong, Chun-Yi ; Chou, Meng-Yuan ; Shiao, Tze-Chang ; Hsieh, Mu-Fen
• Structure alignment based on coding of local geometric measures
  Chang, Peter L. ; Rinne, Andrew W. ; Dewey, T Gregory
• Choosing the best heuristic for seeded alignment of DNA sequences
  Sun, Yanni ; Buhler, Jeremy
• Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction
  Scheeff, Eric D. ; Bourne, Philip E.