„sequence alignment“

Suchergebnisse

600 Treffer

• Genomic multiple sequence alignments: refinement using a genetic algorithm
  Wang, Chunlin ; Lefkowitz, Elliot J.
• Bayesian coestimation of phylogeny and sequence alignment
  Lunter, Gerton ; Miklós, István ; Drummond, Alexei ; Jensen, Jens Ledet ; Hein, Jotun
• Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
  Gupta, Kshitiz ; Thomas, Dina ; Vidya, SV ; Venkatesh, KV ; Ramakumar, S.
• Multiple sequence alignment accuracy and evolutionary distance estimation
  Rosenberg, Michael S.
• PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
  Margelevičius, Mindaugas ; Venclovas, Česlovas
• Multiple sequence alignments of partially coding nucleic acid sequences
  Stocsits, Roman R. ; Hofacker, Ivo L. ; Fried, Claudia ; Stadler, Peter F.
• Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks
  Ma, Qicheng ; Chirn, Gung-Wei ; Cai, Richard ; Szustakowski, Joseph D. ; Nirmala, NR
• libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny
  Butt, Davin ; Roger, Andrew J. ; Blouin, Christian
• GATA: a graphic alignment tool for comparative sequence analysis
  Nix, David A. ; Eisen, Michael B.
• Ancestral sequence alignment under optimal conditions
  Hudek, Alexander K. ; Brown, Daniel G.
• Statistical distributions of optimal global alignment scores of random protein sequences
  Pang, Hongxia ; Tang, Jiaowei ; Chen, Su-Shing ; Tao, Shiheng
• Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
  Neuwald, Andrew F. ; Liu, Jun S.
• ABC: software for interactive browsing of genomic multiple sequence alignment data
  Cooper, Gregory M. ; Singaravelu, Senthil AG ; Sidow, Arend
• Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome
  Matveeva, Olga V. ; Foley, Brian T. ; Nemtsov, Vladimir A. ; Gesteland, Raymond F. ; Matsufuji, Senya ; Atkins, John F. ; Ogurtsov, Aleksey Y. ; Shabalina, Svetlana A.
• MUSCLE: a multiple sequence alignment method with reduced time and space complexity
  Edgar, Robert C.
• Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
  Sadreyev, Ruslan I. ; Grishin, Nick V.
• A fast algorithm for determining the best combination of local alignments to a query sequence
  Conant, Gavin C. ; Wagner, Andreas
• Fast and sensitive multiple alignment of large genomic sequences
  Brudno, Michael ; Chapman, Michael ; Göttgens, Berthold ; Batzoglou, Serafim ; Morgenstern, Burkhard
• OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
  Raghava, GPS ; Searle, Stephen MJ ; Audley, Patrick C. ; Barber, Jonathan D. ; Barton, Geoffrey J.
• A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
  Eddy, Sean R.