„sequence alignment“

Suchergebnisse

600 Treffer

• CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
  Manavski, Svetlin A. ; Valle, Giorgio
• Optimal spliced alignments of short sequence reads
  De Bona, Fabio ; Ossowski, Stephan ; Schneeberger, Korbinian ; Rätsch, Gunnar
• Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins
  Hsing, Michael ; Cherkasov, Artem
• H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
  Merkl, Rainer ; Zwick, Matthias
• ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequences
  Iwama, Hisakazu ; Hori, Yukio ; Matsumoto, Kensuke ; Murao, Koji ; Ishida, Toshihiko
• A new protein linear motif benchmark for multiple sequence alignment software
  Perrodou, Emmanuel ; Chica, Claudia ; Poch, Olivier ; Gibson, Toby J. ; Thompson, Julie D.
• Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores
  Bastien, Olivier ; Maréchal, Eric
• Grammar-based distance in progressive multiple sequence alignment
  Russell, David J. ; Otu, Hasan H. ; Sayood, Khalid
• A fast structural multiple alignment method for long RNA sequences
  Tabei, Yasuo ; Kiryu, Hisanori ; Kin, Taishin ; Asai, Kiyoshi
• A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
  Chica, Claudia ; Labarga, Alberto ; Gould, Cathryn M. ; Lopez, Rodrigo ; Gibson, Toby J.
• RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
  Hane, James K. ; Oliver, Richard P.
• CBESW: Sequence Alignment on the Playstation 3
  Wirawan, Adrianto ; Kwoh, Chee Keong ; Hieu, Nim Tri ; Schmidt, Bertil
• ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
  Roca, Alberto I. ; Almada, Albert E. ; Abajian, Aaron C.
• Clustering exact matches of pairwise sequence alignments by weighted linear regression
  González, Alvaro J. ; Liao, Li
• Automatic extraction of reliable regions from multiple sequence alignments
  Lassmann, Timo ; Sonnhammer, Erik LL
• Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
  Shih, Arthur Chun-Chieh ; Lee, DT ; Peng, Chin-Lin ; Wu, Yu-Wei
• High-throughput sequence alignment using Graphics Processing Units
  Schatz, Michael C. ; Trapnell, Cole ; Delcher, Arthur L. ; Varshney, Amitabh
• Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition
  Tamura, Takeyuki ; Akutsu, Tatsuya
• Predicting and improving the protein sequence alignment quality by support vector regression
  Lee, Minho ; Jeong, Chan-seok ; Kim, Dongsup
• Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
  Bellamy-Royds, Amelia B. ; Turcotte, Marcel