„sequence alignment“

Suchergebnisse

600 Treffer

• Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment
  Gotoh, Osamu ; Morita, Mariko ; Nelson, David R.
• ReformAlign: improved multiple sequence alignments using a profile-based meta-alignment approach
  Lyras, Dimitrios P. ; Metzler, Dirk
• Multidimensional mutual information methods for the analysis of covariation in multiple sequence alignments
  Clark, Greg W. ; Ackerman, Sharon H. ; Tillier, Elisabeth R. ; Gatti, Domenico L.
• H2rs: Deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments
  Janda, Jan-Oliver ; Popal, Ajmal ; Bauer, Jochen ; Busch, Markus ; Klocke, Michael ; Spitzer, Wolfgang ; Keller, Jörg ; Merkl, Rainer
• Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models
  Wheeler, Travis J. ; Clements, Jody ; Finn, Robert D.
• An improved alignment-free model for dna sequence similarity metric
  Bao, Junpeng ; Yuan, Ruiyu ; Bao, Zhe
• Alignment-free analysis of barcode sequences by means of compression-based methods
  La Rosa, Massimo ; Fiannaca, Antonino ; Rizzo, Riccardo ; Urso, Alfonso
• Fast discovery and visualization of conserved regions in DNA sequences using quasi-alignment
  Nagar, Anurag ; Hahsler, Michael
• Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
  Chang, Jia-Ming ; Di Tommaso, Paolo ; Taly, Jean-François ; Notredame, Cedric
• PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL
  Bramucci, Emanuele ; Paiardini, Alessandro ; Bossa, Francesco ; Pascarella, Stefano
• Amino acid function and docking site prediction through combining disease variants, structure alignments, sequence alignments, and molecular dynamics: a study of the HMG domain
  Prokop, Jeremy W. ; Leeper, Thomas C. ; Duan, Zhong-Hui ; Milsted, Amy
• Inferences from structural comparison: flexibility, secondary structure wobble and sequence alignment optimization
  Zhang, Gaihua ; Su, Zhen
• Oculus: faster sequence alignment by streaming read compression
  Veeneman, Brendan A. ; Iyer, Matthew K. ; Chinnaiyan, Arul M.
• MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments
  Collingridge, Peter W. ; Kelly, Steven
• Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment
  Daniels, Noah M. ; Nadimpalli, Shilpa ; Cowen, Lenore J.
• GenNon-h: Generating multiple sequence alignments on nonhomogeneous phylogenetic trees
  Kedzierska, Anna M. ; Casanellas, Marta
• Fast and robust multiple sequence alignment with phylogeny-aware gap placement
  Szalkowski, Adam M.
• PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach
  Sahraeian, Sayed Mohammad Ebrahim ; Yoon, Byung-Jun
• Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures
  Saito, Yutaka ; Sato, Kengo ; Sakakibara, Yasubumi
• SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation
  Anderson, Catherine L. ; Strope, Cory L. ; Moriyama, Etsuko N.