„Simulation-based Algorithms“

Suchergebnisse

370 Treffer

• Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
  Raghunathan, Anu ; Reed, Jennifer ; Shin, Sookil ; Palsson, Bernhard ; Daefler, Simon
• A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides
  Roberts, Mark AJ ; August, Elias ; Hamadeh, Abdullah ; Maini, Philip K. ; McSharry, Patrick E. ; Armitage, Judith P. ; Papachristodoulou, Antonis
• A possibilistic framework for constraint-based metabolic flux analysis
  Llaneras, Francisco ; Sala, Antonio ; Picó, Jesús
• Intervention in gene regulatory networks via greedy control policies based on long-run behavior
  Qian, Xiaoning ; Ivanov, Ivan ; Ghaffari, Noushin ; Dougherty, Edward R.
• Identifying disease-specific genes based on their topological significance in protein networks
  Dezso, Zoltan ; Nikolsky, Yuri ; Nikolskaya, Tatiana ; Miller, Jeremy ; Cherba, David ; Webb, Craig ; Bugrim, Andrej
• Knowledge based identification of essential signaling from genome-scale siRNA experiments
  Bankhead, Armand ; Sach, Iliana ; Ni, Chester ; LeMeur, Nolwenn ; Kruger, Mark ; Ferrer, Marc ; Gentleman, Robert ; Rohl, Carol
• Narrative-based computational modelling of the Gp130/JAK/STAT signalling pathway
  Guerriero, Maria Luisa ; Dudka, Anna ; Underhill-Day, Nicholas ; Heath, John K. ; Priami, Corrado
• Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations
  Zare, Hossein ; Sangurdekar, Dipen ; Srivastava, Poonam ; Kaveh, Mostafa ; Khodursky, Arkady
• A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation
  Mobini, Reza ; Andersson, Bengt Å. ; Erjefält, Jonas ; Hahn-Zoric, Mirjana ; Langston, Michael A. ; Perkins, Andy D. ; Cardell, Lars Olaf ; Benson, Mikael
• Genome-scale constraint-based modeling of Geobacter metallireducens
  Sun, Jun ; Sayyar, Bahareh ; Butler, Jessica E. ; Pharkya, Priti ; Fahland, Tom R. ; Famili, Iman ; Schilling, Christophe H. ; Lovley, Derek R. ; Mahadevan, Radhakrishnan
• Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks
  Michoel, Tom ; De Smet, Riet ; Joshi, Anagha ; Van de Peer, Yves ; Marchal, Kathleen
• ALC: automated reduction of rule-based models
  Koschorreck, Markus ; Gilles, Ernst Dieter
• One hub-one process: a tool based view on regulatory network topology
  Axelsen, Jacob Bock ; Bernhardsson, Sebastian ; Sneppen, Kim
• GridCell: a stochastic particle-based biological system simulator
  Boulianne, Laurier ; Al Assaad, Sevin ; Dumontier, Michel ; Gross, Warren J.
• A logic-based diagram of signalling pathways central to macrophage activation
  Raza, Sobia ; Robertson, Kevin A. ; Lacaze, Paul A. ; Page, David ; Enright, Anton J. ; Ghazal, Peter ; Freeman, Tom C.
• OptCircuit: An optimization based method for computational design of genetic circuits
  Dasika, Madhukar S. ; Maranas, Costas D.
• Towards metabolic networks phylogeny using Petri Net-based expansional analysis
  Lanzeni, Stefano ; Messina, Enza ; Archetti, Francesco
• Context sensitivity in individual-based modeling
  Chen, Chih-Chun ; Clack, Christopher D. ; Nagl, Sylvia B.
• Data mining techniques in a CGH-based breast cancer subtype profiling: an immune perspective with comparative study
  Menolascina, Filippo ; Tommasi, Stefania ; Chiarappa, Patrizia ; Bevilacqua, Vitoantonio ; Mastronardi, Giuseppe ; Paradiso, Angelo
• Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors
  Andersson, Claes R. ; Hvidsten, Torgeir R. ; Isaksson, Anders ; Gustafsson, Mats G. ; Komorowski, Jan