„Multiple sequence alignment“

Suchergebnisse

218 Treffer

• A fast structural multiple alignment method for long RNA sequences
  Tabei, Yasuo ; Kiryu, Hisanori ; Kin, Taishin ; Asai, Kiyoshi
• A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
  Chica, Claudia ; Labarga, Alberto ; Gould, Cathryn M. ; Lopez, Rodrigo ; Gibson, Toby J.
• ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
  Roca, Alberto I. ; Almada, Albert E. ; Abajian, Aaron C.
• Automatic extraction of reliable regions from multiple sequence alignments
  Lassmann, Timo ; Sonnhammer, Erik LL
• Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
  Shih, Arthur Chun-Chieh ; Lee, DT ; Peng, Chin-Lin ; Wu, Yu-Wei
• Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
  Bellamy-Royds, Amelia B. ; Turcotte, Marcel
• PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
  Caffrey, Daniel R. ; Dana, Paul H. ; Mathur, Vidhya ; Ocano, Marco ; Hong, Eun-Jong ; Wang, Yaoyu E. ; Somaroo, Shyamal ; Caffrey, Brian E. ; Potluri, Shobha ; Huang, Enoch S.
• Lower bounds on multiple sequence alignment using exact 3-way alignment
  Colbourn, Charles J. ; Kumar, Sudhir
• Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost
  Yamada, Shinsuke ; Gotoh, Osamu ; Yamana, Hayato
• Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
  Siddharthan, Rahul
• The accuracy of several multiple sequence alignment programs for proteins
  Nuin, Paulo AS ; Wang, Zhouzhi ; Tillier, Elisabeth RM
• State of the art: refinement of multiple sequence alignments
  Chakrabarti, Saikat ; Lanczycki, Christopher J. ; Panchenko, Anna R. ; Przytycka, Teresa M. ; Thiessen, Paul A. ; Bryant, Stephen H.
• SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools
  Shih, Arthur Chun-Chieh ; Lee, DT ; Lin, Laurent ; Peng, Chin-Lin ; Chen, Shiang-Heng ; Wu, Yu-Wei ; Wong, Chun-Yi ; Chou, Meng-Yuan ; Shiao, Tze-Chang ; Hsieh, Mu-Fen
• MACSIMS : multiple alignment of complete sequences information management system
  Thompson, Julie D. ; Muller, Arnaud ; Waterhouse, Andrew ; Procter, Jim ; Barton, Geoffrey J. ; Plewniak, Frédéric ; Poch, Olivier
• Kalign – an accurate and fast multiple sequence alignment algorithm
  Lassmann, Timo ; Sonnhammer, Erik LL
• Genomic multiple sequence alignments: refinement using a genetic algorithm
  Wang, Chunlin ; Lefkowitz, Elliot J.
• Multiple sequence alignment accuracy and evolutionary distance estimation
  Rosenberg, Michael S.
• Multiple sequence alignments of partially coding nucleic acid sequences
  Stocsits, Roman R. ; Hofacker, Ivo L. ; Fried, Claudia ; Stadler, Peter F.
• ABC: software for interactive browsing of genomic multiple sequence alignment data
  Cooper, Gregory M. ; Singaravelu, Senthil AG ; Sidow, Arend
• Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome
  Matveeva, Olga V. ; Foley, Brian T. ; Nemtsov, Vladimir A. ; Gesteland, Raymond F. ; Matsufuji, Senya ; Atkins, John F. ; Ogurtsov, Aleksey Y. ; Shabalina, Svetlana A.